Cincinnati Children’s cares for patients and families from all 50 US states and dozens of other countries each year – including children with complex or rare disorders.
So, how good is Cincinnati Children’s Hospital at using precision medicine to treat kids with for autism + ID ?
Spoiler alert, I will leave you to answer the above question. It is up to you to decide!
I will give them 10 out 10 for at least trying to use genetic testing to improve the outcomes.
I was very surprised to find a paper with case studies showing how the clinicians tried to use mutations in autism/ID genes to develop a matching therapy.
If you are interested you can use your skills to see what kind of precision medicine you would have tried.
One of the children does have Glass syndrome (SATB2), which our reader Ling is interested in. I hoped they would do something clever, in fact what they did was find a fracture in his foot. Low bone density is a feature of this syndrome and an undiagnosed fracture in your foot is going to hurt and can trigger self-injurious behavior.
There is even a Pitt Hopkins kid, there is plenty in this blog about that syndrome.
The idea of the paper was to show that running WES/WGS on their residential kids with autism + ID resulted in better care and so reduced nights per year in the hospital.
The case studies are the interesting part. The logic of the paper is deeply flawed because the kids who did not get special insights after the WES/WGS also showed a dramatic reduction in their nights per year at the hospital. Also, in the diagnosed cohort / treatment group", many kids did not actually receive any treatment. (see table 4)
DiCo = Diagnosed Cohort
Undico = Undiagnosed Cohort
You can look up all members of the DICo cohort that got a definitive genetic testing result.
There are plenty of familiar genes, I am really surprised these kids had not previously been diagnosed
You can see the therapy they tried. Judge for yourself. I would have done much more, but the authors are the doctors ! They did have some successes.
Click on this link to open the full table with 56 patients:
I was amazed at how much time these kids with autism + ID spend in Cincinnati Children’s Hospital. They are in hospital for 2 to 4 weeks a year, year after year. This must cost someone a fortune.
Why are these kids in hospital so much? It looks like Intermittent Explosive Disorder (IED), the fancy name for self-injurious behavior. In the US, and some other countries, when your kid's behavior gets really bad you call the police and they get taken to the ER at the local hospital and some then make it to specialist units like Cincinnati Children's Hospital. Most parents across the world never have this option, and I actually think this is better. There is rarely any magic at the ER in these cases; better to find the solution at home, without spending $50,000.
Broader Landscape
of Precision Medicine for Autism + ID in the U.S.
Cincinnati Children’s is one of roughly 15 specialized centers in the U.S. that manage children with severe autism and intellectual disability in residential or inpatient settings. Another well-known example is Kennedy Krieger Institute at Johns Hopkins, which has historically piloted innovative, often unpublished interventions for rare genetic syndromes. Across these centers, the use of whole exome or genome sequencing is slowly becoming more common, but actionable, gene-targeted therapies remain rare. Most “precision medicine” efforts focus on enhanced monitoring, early detection of medical complications, and tailored behavioral or supportive interventions rather than disease-modifying treatments. This context highlights both the promise and current limitations of precision medicine in neurodevelopmental disorders.
My blog is really all about disease-modifying treatments.
We did see that when Dr Kelley was at Kennedy Krieger/Johns Hopkins they did lots of clever things that are out of the mainstream, but were not published in the literature.
Today’s paper is definitely a step forward, because we can all see how much/little is being done.
The paper is very readable, just click on the link and read it.
Conferring a Genetic Diagnosis for Children with Neurodevelopmental Disorders in the Inpatient Psychiatry Setting May Reduce Hospital Stays and Improve Behavior
https://link.springer.com/article/10.1007/s41252-025-00466-w
These 56 diagnosed patients formed the Diagnosed Cohort—DiCo. Details of variant classification and interpretation are included in Table 4. A further 81 patients received nondiagnostic genetic testing results, including negative findings or VUS findings not felt to explain the phenotype or lacking functional evidence (forming the Undiagnosed Cohort—UndiCo). We then quantified the total inpatient psychiatric hospital days 12 months before and 12 months after genetic test result delivery.
Individual 10 is a 17-year-old male with autism, intellectual disability, and intermittent explosive disorder admitted to inpatient psychiatry for aggressive behavior management. Additional medical history includes large habitus and obesity, non-alcoholic fatty liver disease, high-arched palate, dental crowding, foot pain, and back pain. Genetic testing (ASD/ID exome panel) initiated during inpatient psychiatry admission identified a likely pathogenic de novo variant in SATB2(NM_001172509.2):c.169G > A p.(Gly57Ser), diagnostic for SATB2-Neurodevelopmental disorder (glass syndrome). Intellectual disability, behavioral challenges, and craniofacial dysmorphology are well described in this condition. Furthermore, osteopenia and epilepsy have been reported in patients with this condition. After observing slightly elevated alkaline phosphatase levels on previously completed routine labs, 192 u/L (40–150 u/L normal range) bone density scans were ordered and were normal. With ongoing foot and back pain, x-rays and MRI studies were ordered and demonstrated a hairline toe fracture. The patient was placed in a walking boot to allow for recovery of the fracture. Being vigilant for fracture evaluation in a condition with known osteopenia was important to care for this patient. Bone pain is a likely contributor to behavior outbursts.
Individual 15 is a 13-year-old male with autism, mild intellectual disability, and intermittent explosive disorder admitted to inpatient psychiatry for aggressive behavior management. Medical history also includes obesity, large stature, and macrocephaly. Genetic testing (ASD/ID exome panel) initiated during inpatient psychiatry stay identified two variants in TBC1D7. One nonsense variant: TBC1D7 NM_001318809.1:c.6dup p.(Glu3Ter), and an in-trans variant consisting of a duplication of 335 bps in exon 6 arr[GRCh37]chr613,307,82,613,308,161 × 3 predicted to disrupt the reading frame of TBC1D7. Both variants were listed as VUS; however, on review of the literature, nonsense and loss-of-function biallelic variants have been reported in this gene with a phenotype of patients with intellectual disability and macrocephaly. Thus, with a consistent phenotype and two predicted loss-of-function variants, a clinical diagnosis of TBC1D7-NDD was conferred. As TBC1D7 is the third subunit of the TSC1-TSC2 complex, we initiated a trial of rapamycin, an mTOR inhibitor, to target autism comorbidities of aggression and irritability. Parental report after 6 months of medication trial was that aggressive symptoms had subjectively improved.
Individual 30 is an individual with autism and intellectual disability, admitted to inpatient psychiatry for self-injurious behavior management. The patient is nonverbal with behavioral stereotypies. Physical exam was notable for up-slanting palpebral fissures and multiple café-au-lait macules on the abdomen, back, and flank, along with axillary freckling. Genetic testing (exome) was initiated during inpatient psychiatry stay and identified a variant in NF1: (NM_001042492.3):c.7870-9 T > G p.? which, though listed as a VUS, was predicted to affect the splice site and alter protein function. As the patient qualified for a clinical diagnosis of NF1 with more than 6 café-au-lait macules and axillary freckling, the patient was conferred a diagnosis of NF1. Following this diagnosis, an MRI of the brain and orbits was ordered per NF1 tumor surveillance protocols, which identified a plexiform neurofibroma within the supra- and infrazygomatic left masticator space, superficial to the masseter and temporalis muscles, extending into the left temporomandibular joint, with mild anterior displacement of the mandibular condyle. Plexiform neurofibromas can be painful, and in a nonverbal patient it may be difficult to communicate this pain. A high-dose ibuprofen prescription was provided to the patient to treat any presumed pain, which also translated into less frequent behavioral outbursts.
In SATB2 there are not enough osteoblasts, the cells that build your bones. Activating Wnt can substitute for some missing SATB2 function (lithium, telmisartan, statins etc).
For NF1 you likely need a PAK1 inhibitor. They exist and the cheap one is now controversial because of its use to treat Covid-19. If I mention the name post-Covid my post gets deleted! Other options are bee propolis rich in Caffeic Acid Phenethyl Ester (CAPE), which is safe, or the experimental Fragile X drug FRAX486 still sitting on the shelf at Roche, who had bought Genentech, who had bought Afrexis, set up by a Japanese Nobel Laureate I once wrote about. I remember because Susumu Tonegawa was a faculty member at MIT when his son, an MIT freshman, killed himself. A sad story indeed.
I recall being contacted a long while back by a Canadian whose adult child with severe autism had just received a genetic diagnosis that suggested a PAK1 inhibitor as a therapy. Of course, nothing was being done about it, and he ended up at my blog. Did he persevere or give up? One of our readers, long ago, was using FRAX486, so it is possible.
Conclusion
The interesting part of today’s paper for me was to see what therapy was considered for the 56 cases with a single genetic diagnosis. This is something I have done quite a lot of over the years. More people should be doing it.
Many parents tell me they are very disappointed when clinicians refuse to try and treat their child with a genetic diagnosis. It is as if the geneticist thinks “Okay there is the diagnosis, job done … next patient please”.
So, as I said at the start of this post, 10/10 to Dr Shillington for trying to help these kids, and 10/10 for sharing what she did. As to what she actually did, it was not as good. Maybe she should read this blog for ideas, Hah ! 😃